Review on Physiome.jp
  • Toward integration of biological and physiological functions at multiple levels
    Taishin Nomura, Frontiers in Systems Physiology, Vol. 1, Article 164, 2010
    [PDF]
insilicoML
  • Specifications of insilicoML 1.0: A Multilevel Biophysical Model Description Language
    Asai et al., J. Physiol. Sci. Vol. 58, No. 7; Dec. 2008; pp. 447-45
    [PDF]
  • What's insilicoML(ver0.1alpha)
    Yoshiyuki Asai
    [PDF / HTML]
insilicoIDE
  • Finite Element Method Analysis in insilicoIDE
    Oka et al., Proceeding of The 50th Annual Conference of Japanese Society for Medical and Biological Engineering
    [PDF]
  • Harnessing Biological Complexity
    Nomura Taishin, Asai Yoshiyuki, Springer, ISBN: 978-4-431-53879-0
    Physiome Project
    [Details (springer.com)]
  • A Platform for in silico Modeling of Physiological Systems III.
    Suzuki et al., IEEE-EMBS 2009 Conference Proceedings Reprint
    [PDF]
  • Optimization Techniques for Parallel Biophysical Simulations Generated by insilicoIDE
    Eric M. Heien and Yoshiyuki Asai and Taishin Nomura and Kenichi Hagihara, IPSJ Online Transactions
    [PDF / BibTeX]

    ==============================
    Notice for the use of this material The copyright of this material is retained by the Information Processing Society of Japan (IPSJ). This material is published on this web site with the agreement of the author (s) and the IPSJ. Please be complied with Copyright Law of Japan and the Code of Ethics of the IPSJ if any users wish to reproduce, make derivative work, distribute or make available to the public any part or whole thereof.
    ==============================

  • A Platform for in silico Modeling of Physiological Systems II. CellML Compatibility and Other Extended Capabilities
    Suzuki et al., IEEE-EMBS 2008 Conference Proceedings Reprint
    [PDF]
  • A Platform for in silico Modeling of Physiological Systems II. CellML Compatibility and Other Extended Capabilities
    Suzuki et al., IEEE-EMBS 2008 Conference Poster
    [PDF]
  • CellML-Compatible Integrated Development Environment for MultilevelModeling of Biophysical Functions
    Yoshiyuki Asai, 2nd CellML Workshop (26 March, 2008 at Auckland) PPT slides
    [PDF]
  • A Platform for in silico Modeling of Physiological Systems
    Kawazu et al., IEEE-EMBS 2007 Conference Proceedings Reprint
    [PDF]
Symposium
  • The 4th Global COE International Symposium on Physiome and Systems Biology
    for Integrated Life Sciences and Predictive Medicine (21th November 2011 - 23th November 2011)
    International Symposium Series for 80th Anniversary of Osaka University
    Final Symposium of GCOE in silico medicine
    [Photo Collection...]
  • SBML and ISML Joint Winter School (14th December 2009 - 18th December 2009)
    "Winter School on Computational Modeling in Biology -Data and model sharing by SBML and insilicoML-"
    [Presentation Slides... / Photo Collection...]
  • The 3rd MEI international symposium (30th Nov 2008 - 2nd Dec 2008)
    "Physiome and Systems Biology for Integrated Life Sciences and Predictive Medicine"
    [Presentation Slides...]
Survey
  • A Questionnaire Survey on the Model Sharing in the Fields of Biosciences and Bioengineering in Japan
    Performed by Physiome and Systems Biology Initiative Japan
    [PDF]