http://www.physiome.jp/wiki/ 2012-05-19T17:00:26+09:00 http://www.physiome.jp/wiki/ http://www.physiome.jp/wiki/lib/images/favicon.ico text/html 2012-03-16T14:21:56+09:00 ide-developer http://www.physiome.jp/wiki/isml:specifications:ismodel:module-set:physical-quantity-set?rev=1331875316&do=diff This is a set of physical-quantity(s). Physical-quantities characterize a module quantitatively. One of the important roles of the physical-quantity is to describe “state” of the module and spatiotemporal evolution of the state that is mathematically formulated, for example, by differential equations. A physical-quantity is composed of children tags; name, value-type-set, dimension, initial-value, argument-set, domain, problem-condition-set and implementation. A physical-quantity must specify it… text/html 2012-03-09T16:13:33+09:00 ide-developer http://www.physiome.jp/wiki/isml:specifications:ismodel:module-set?rev=1331277213&do=diff This is a set of modules. A module represents a functional component composing the model. A module is composed of the following children; property, port-set, physical-quantity-set, event-set and morphology. A module is given its ID (module-id) by a UUID which is unique across insilico models. For an insilico model to be registered to a model database, the root module of the model must be encapsulated. A database ID (db-id) is given to only a capsule module which encapsulates the root module of t… text/html 2011-11-19T00:46:06+09:00 Tatuhide Okamoto http://www.physiome.jp/wiki/iside:history?rev=1321631166&do=diff insilicoIDE 1.4 insilicoIDE 1.4.4 (18 Nov. 2011) * insilicoIDE * Converters from ISML to CellML has been improved. * A way to link functional edges between modules in the different capsulation scope have been improved. * Func-expressin and Nominal type physical-quantities can be created now. * Several user interfaces have been improved and became more friendly. * Several bugs on physical quantity dialog have been fixed. text/html 2011-07-11T12:27:27+09:00 Tatuhide Okamoto http://www.physiome.jp/wiki/isml:specifications:ismodel?rev=1310354847&do=diff In this text, a term an “insilico model” or simply a “model” is used to specify a single model described by an entire insilicoML document, which include meta-information, definition of units, morphological data and timeseries data. A single model may be divided into several sub-models or components. Each of those components is referred to as a “module”. The user can import an insilico model from the model database into their own model building process. Once an insilico model is imported, it is t…