http://www.physiome.jp/wiki/ 2012-05-19T16:57:44+09:00 http://www.physiome.jp/wiki/ http://www.physiome.jp/wiki/lib/images/favicon.ico text/html 2010-05-21T13:57:06+09:00 http://www.physiome.jp/wiki/iside:apihelp?rev=1274417826&do=diff advancedapi builder * copy_subtree * decapsulate * encapsulate * get_children_module_ids * get_descendant_module_ids * link_forwarding_edge * link_modules * link_ports * remove_edge * remove_physicalquantity * remove_port * remove_subtree text/html 2010-05-21T14:44:32+09:00 http://www.physiome.jp/wiki/iside:faqs?rev=1274420672&do=diff insilicoIDE 1.x * How to simulate an ISML model? * I tried to simulate an ISML model on insilicoSim, but display an error window. How should I handle this? * What kinds of MathML elements does insilicoSim support? insilicoIDE 0.3 * I tried to simulate a model on ISIDE, but no waveforms appear. How should I handle this? * Saved my ISML model on IDE as CellML file, but PCEnv judged the exported file as incorrect. How should I handle this? * How can I get a walking motion of the skel… text/html 2011-11-19T00:46:06+09:00 http://www.physiome.jp/wiki/iside:history?rev=1321631166&do=diff insilicoIDE 1.4 insilicoIDE 1.4.4 (18 Nov. 2011) * insilicoIDE * Converters from ISML to CellML has been improved. * A way to link functional edges between modules in the different capsulation scope have been improved. * Func-expressin and Nominal type physical-quantities can be created now. * Several user interfaces have been improved and became more friendly. * Several bugs on physical quantity dialog have been fixed. text/html 2010-10-18T11:45:16+09:00 http://www.physiome.jp/wiki/iside:simulation_tools?rev=1287369916&do=diff insilicoSim isml2ffem isml2cpp isml2java Requirements for Execution Required External Tool Available Models ODE PDE DDE SDE DE AE GRAPH CONDITIONAL LOOP VECTOR/MATTRIX Planning TIMESERIES DATA EXTRA-IMPLEMENTATION INSTANTANEOUS … text/html 2010-05-17T17:17:51+09:00 http://www.physiome.jp/wiki/iside:tutorilas?rev=1274084271&do=diff * Notes for insilicoIDE Python API * Getting Started GUI * Getting Started CLI * Instructions on insilicoSim * Example: 2D FitzHugh-Nagumo model * What is FreeFem++ ? * FreeFem++ download information * Enjoy Biophysical Simulation on insilicoIDE (with several examples) * Simulation of Hodgkin-Huxley equation using insilicoDB and insilicoIDE * Construction and simulation of two coupled Luo-Rudy models with gap-junction using ISDB and ISIDE * Exporting ISML model to CellML an…